Eulor9B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000140 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 240 |
| Kimura value | 23.10 |
| Tau index | 0.0000 |
| Description | Eulor9B (Euteleostomi-conserved low frequency repeat 9B) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (~40 copies). Has a hairpin-tail structure typical for all Eulor repeats. However, termini are poorly defined. Eulor9B is slightly more similar to the reverse complement of Eulor9A. |
| Sequence |
CAATATGTGATGGCAACATTACGGTTGAGATTTTAAACGCACAAAATGTCAGGAAATTCAAAGTTATGGTTCCCACGGCAACCGTAACTCGGCCACATTGCACATATATATTAAGGCATTAAAGTTAACACCATNCGCAGTCACGNAANAAACTATATATGCATAAGGGGGCGGAGTTACGGTTGCTATGGGAACCATAACTTTGAATTTCCTGACTTTTGTGCGTTTGAATTTNCTNGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9B | CHA4 | 170 | 177 | + | 13.52 | GGCGGAGT |
| Eulor9B | Rfx6 | 182 | 190 | - | 13.48 | CATAGCAAC |
| Eulor9B | Sp1 | 167 | 175 | - | 13.41 | TCCGCCCCC |
| Eulor9B | KLF7 | 169 | 176 | + | 13.34 | GGGCGGAG |
| Eulor9B | NAC035 | 74 | 80 | + | 13.30 | CACGGCA |
| Eulor9B | sptf-3 | 168 | 174 | - | 13.11 | CCGCCCC |
| Eulor9B | unc-86 | 159 | 166 | - | 13.03 | TTATGCAT |
| Eulor9B | URC2 | 172 | 179 | + | 12.98 | CGGAGTTA |
| Eulor9B | RFX2 | 69 | 82 | + | 12.97 | GTTCCCACGGCAAC |
| Eulor9B | SP9 | 167 | 176 | - | 12.93 | CTCCGCCCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
