Eulor9B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000140 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 240 |
| Kimura value | 23.10 |
| Tau index | 0.0000 |
| Description | Eulor9B (Euteleostomi-conserved low frequency repeat 9B) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (~40 copies). Has a hairpin-tail structure typical for all Eulor repeats. However, termini are poorly defined. Eulor9B is slightly more similar to the reverse complement of Eulor9A. |
| Sequence |
CAATATGTGATGGCAACATTACGGTTGAGATTTTAAACGCACAAAATGTCAGGAAATTCAAAGTTATGGTTCCCACGGCAACCGTAACTCGGCCACATTGCACATATATATTAAGGCATTAAAGTTAACACCATNCGCAGTCACGNAANAAACTATATATGCATAAGGGGGCGGAGTTACGGTTGCTATGGGAACCATAACTTTGAATTTCCTGACTTTTGTGCGTTTGAATTTNCTNGC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9B | RFX5 | 182 | 195 | - | 19.09 | GTTCCCATAGCAAC |
| Eulor9B | RFX5 | 182 | 195 | + | 18.76 | GTTGCTATGGGAAC |
| Eulor9B | RFX2 | 182 | 195 | + | 18.33 | GTTGCTATGGGAAC |
| Eulor9B | RFX2 | 182 | 195 | - | 17.71 | GTTCCCATAGCAAC |
| Eulor9B | RFX3 | 181 | 196 | - | 17.48 | GGTTCCCATAGCAACC |
| Eulor9B | Su(H) | 68 | 77 | - | 17.17 | CGTGGGAACC |
| Eulor9B | RFX1 | 181 | 196 | + | 16.59 | GGTTGCTATGGGAACC |
| Eulor9B | SP1 | 168 | 176 | + | 16.13 | GGGGCGGAG |
| Eulor9B | RFX1 | 181 | 196 | - | 16.12 | GGTTCCCATAGCAACC |
| Eulor9B | SP4 | 168 | 176 | + | 16.07 | GGGGCGGAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
