Eulor9B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000140 |
|---|---|
| TE superfamily | Transposase |
| TE order | DNA |
| Species | Amniota |
| Length | 240 |
| Kimura value | 23.10 |
| Tau index | 0.0000 |
| Description | Eulor9B (Euteleostomi-conserved low frequency repeat 9B) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (~40 copies). Has a hairpin-tail structure typical for all Eulor repeats. However, termini are poorly defined. Eulor9B is slightly more similar to the reverse complement of Eulor9A. |
| Sequence |
CAATATGTGATGGCAACATTACGGTTGAGATTTTAAACGCACAAAATGTCAGGAAATTCAAAGTTATGGTTCCCACGGCAACCGTAACTCGGCCACATTGCACATATATATTAAGGCATTAAAGTTAACACCATNCGCAGTCACGNAANAAACTATATATGCATAAGGGGGCGGAGTTACGGTTGCTATGGGAACCATAACTTTGAATTTCCTGACTTTTGTGCGTTTGAATTTNCTNGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9B | btd | 167 | 175 | + | 15.92 | GGGGGCGGA |
| Eulor9B | RFX3 | 181 | 196 | + | 15.88 | GGTTGCTATGGGAACC |
| Eulor9B | RFX5 | 69 | 82 | + | 15.55 | GTTCCCACGGCAAC |
| Eulor9B | RFX5 | 69 | 82 | - | 15.36 | GTTGCCGTGGGAAC |
| Eulor9B | lin-54 | 200 | 212 | - | 14.96 | GGAAATTCAAAGT |
| Eulor9B | lin-54 | 52 | 64 | + | 14.96 | GGAAATTCAAAGT |
| Eulor9B | Spps | 167 | 177 | - | 14.95 | ACTCCGCCCCC |
| Eulor9B | dsf | 213 | 220 | - | 14.52 | AAAAGTCA |
| Eulor9B | SP2 | 168 | 176 | + | 14.43 | GGGGCGGAG |
| Eulor9B | mab-3 | 8 | 20 | - | 14.17 | AATGTTGCCATCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
