Eulor9A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000139 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 301 |
| Kimura value | 26.20 |
| Tau index | 0.0000 |
| Description | Eulor9A (Euteleostomi-conserved low frequency repeat 9A) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (>100 copies). Has a hairpin-tail structure typical for all Eulor repeats. However, termini are poorly defined. |
| Sequence |
TAAATTAAATGCAAAAAACTACGTTAATGCAACGTTATGGCTGAGAATTTAAACGCACAAAAGTCAGGAAATTCAAAGTTACGGTTCCCACAGCAACCGTAACTCGGCCCCCTTGCGCATAGNAGTATTTTGTATTACTGTATATGNTGTTAAATTTATGCCTTAATATCAGTATGTGCAATGTGGCCGAGTTACGGTTGCTGTGGGAACCGTAACTTTGAATTTCCTGACTTTTGTGCGTTTAAAATCTCAACCGTAACGTTGCATTAACGTAGGNTTTTTTGCATTTTACTTTCCTTTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9A | slbo | 175 | 182 | - | 11.56 | ATTGCACA |
| Eulor9A | HDG7 | 3 | 12 | - | 11.52 | GCATTTAATT |
| Eulor9A | NLP7 | 228 | 235 | + | 11.49 | TGACTTTT |
| Eulor9A | NLP7 | 59 | 66 | - | 11.49 | TGACTTTT |
| Eulor9A | HDG11 | 4 | 12 | + | 11.46 | ATTAAATGC |
| Eulor9A | RFX2 | 197 | 210 | + | 11.37 | GTTGCTGTGGGAAC |
| Eulor9A | RFX2 | 84 | 97 | - | 11.37 | GTTGCTGTGGGAAC |
| Eulor9A | PLAGL2 | 105 | 112 | + | 11.30 | CGGCCCCC |
| Eulor9A | TCP7 | 203 | 213 | + | 11.26 | GTGGGAACCGT |
| Eulor9A | TCP7 | 81 | 91 | - | 11.26 | GTGGGAACCGT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
