Eulor9A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000139 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 301 |
| Kimura value | 26.20 |
| Tau index | 0.0000 |
| Description | Eulor9A (Euteleostomi-conserved low frequency repeat 9A) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (>100 copies). Has a hairpin-tail structure typical for all Eulor repeats. However, termini are poorly defined. |
| Sequence |
TAAATTAAATGCAAAAAACTACGTTAATGCAACGTTATGGCTGAGAATTTAAACGCACAAAAGTCAGGAAATTCAAAGTTACGGTTCCCACAGCAACCGTAACTCGGCCCCCTTGCGCATAGNAGTATTTTGTATTACTGTATATGNTGTTAAATTTATGCCTTAATATCAGTATGTGCAATGTGGCCGAGTTACGGTTGCTGTGGGAACCGTAACTTTGAATTTCCTGACTTTTGTGCGTTTAAAATCTCAACCGTAACGTTGCATTAACGTAGGNTTTTTTGCATTTTACTTTCCTTTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9A | Su(H) | 202 | 211 | + | 17.48 | TGTGGGAACC |
| Eulor9A | Su(H) | 83 | 92 | - | 17.48 | TGTGGGAACC |
| Eulor9A | lin-54 | 215 | 227 | - | 14.96 | GGAAATTCAAAGT |
| Eulor9A | lin-54 | 67 | 79 | + | 14.96 | GGAAATTCAAAGT |
| Eulor9A | dsf | 228 | 235 | - | 14.52 | AAAAGTCA |
| Eulor9A | dsf | 59 | 66 | + | 14.52 | AAAAGTCA |
| Eulor9A | DOF5.1 | 279 | 297 | - | 13.83 | GGAAAGTAAAATGCAAAAA |
| Eulor9A | TCX3 | 214 | 225 | - | 13.77 | AAATTCAAAGTT |
| Eulor9A | TCX3 | 69 | 80 | + | 13.77 | AAATTCAAAGTT |
| Eulor9A | RFX5 | 197 | 210 | - | 13.69 | GTTCCCACAGCAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
