Eulor9A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000139 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 301 |
| Kimura value | 26.20 |
| Tau index | 0.0000 |
| Description | Eulor9A (Euteleostomi-conserved low frequency repeat 9A) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (>100 copies). Has a hairpin-tail structure typical for all Eulor repeats. However, termini are poorly defined. |
| Sequence |
TAAATTAAATGCAAAAAACTACGTTAATGCAACGTTATGGCTGAGAATTTAAACGCACAAAAGTCAGGAAATTCAAAGTTACGGTTCCCACAGCAACCGTAACTCGGCCCCCTTGCGCATAGNAGTATTTTGTATTACTGTATATGNTGTTAAATTTATGCCTTAATATCAGTATGTGCAATGTGGCCGAGTTACGGTTGCTGTGGGAACCGTAACTTTGAATTTCCTGACTTTTGTGCGTTTAAAATCTCAACCGTAACGTTGCATTAACGTAGGNTTTTTTGCATTTTACTTTCCTTTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9A | POU5F1 | 281 | 287 | - | 12.44 | ATGCAAA |
| Eulor9A | POU5F1 | 9 | 15 | + | 12.44 | ATGCAAA |
| Eulor9A | sens | 245 | 254 | + | 12.30 | AAATCTCAAC |
| Eulor9A | CTCFL | 107 | 114 | - | 12.13 | AAGGGGGC |
| Eulor9A | AHL20 | 3 | 10 | + | 12.09 | AATTAAAT |
| Eulor9A | ZNF667 | 242 | 252 | + | 12.06 | TTAAAATCTCA |
| Eulor9A | Nr2e1 | 227 | 235 | - | 11.62 | AAAAGTCAG |
| Eulor9A | Nr2e1 | 59 | 67 | + | 11.62 | AAAAGTCAG |
| Eulor9A | LIN54 | 217 | 223 | + | 11.59 | TTTGAAT |
| Eulor9A | LIN54 | 71 | 77 | - | 11.59 | TTTGAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
