Eulor8

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0000138
TE superfamily	Tc1-Mariner
TE class	DNA
Species	Amniota
Length	562
Kimura value	30.49
Tau index	0.0000
Description	Eulor8 (Euteleostomi-conserved low frequency repeat 8)
Comment	Putative DNA transposon (assignment unclear). Eulor8 forms an imperfect 562 bp hairpin, with no tail. Element boundary unclear. Ends unsure, though CAG...CTG make for familiar termini flanked by TA TSDs.
Sequence	CAGCATCCGAGGAGANNCATAAGATTNCAATCTCGAGATTGTAACGAGAATGGGTTAAGTTTGTACCATTTCCCATTCTCGTTACAATCNTCGTCACGAGAATGGATTCATGTTGTGCCATTTTCTGTTCTCGTTACAATCTTTGTCACGAGAACGAGGTATCAGAATTTTAATGCCTAATACGTTCTGTGAAATACGGCAGCGTGCTNTACTGCTTTGACCTTTTCAATATTCTGCATTTTGATTGGCTGGCCATTCCGCCTCTTCCTCACAGGTTANCGAGGCTGTAAACAGGGGAGAACGGGAATGGCCAGCCAATCAAATTACAGAATATTGAAAAGGTCAAAGTAGTACAGCATACTGCTATAATTCACAGAATATATGAGGCATTAAAATTCCGATACCTCATTCTCGTGACAAAGATTGTAACGAGAACAGAAAATGGCACGACATGAATCCGTTCTCGTGACAANGATTGTAACGAGAACGGGAAATGGTACAAANTTAACCCATTCTCGTTACAATCTTAAGATTGTAATCTCGTGGTCCTCCTCAGATGCCG

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
Eulor8	FOXP2	286	294	+	14.30	TGTAAACAG
Eulor8	NR4A2	218	225	-	14.20	AAAGGTCA
Eulor8	NR4A2	338	345	+	14.20	AAAGGTCA
Eulor8	WRKY59	216	225	-	14.18	AAAGGTCAAA
Eulor8	WRKY59	338	347	+	14.18	AAAGGTCAAA
Eulor8	SPL8	57	72	+	14.17	AAGTTTGTACCATTTC
Eulor8	TCF7L1	214	225	-	14.05	AAAGGTCAAAGC
Eulor8	FOXS1	286	293	+	13.89	TGTAAACA
Eulor8	WRKY26	215	225	-	13.84	AAAGGTCAAAG
Eulor8	WRKY26	338	348	+	13.84	AAAGGTCAAAG

1 2 3 4 5 ... 22

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).