Eulor8

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0000138
TE superfamily	Tc1-Mariner
TE class	DNA
Species	Amniota
Length	562
Kimura value	30.49
Tau index	0.0000
Description	Eulor8 (Euteleostomi-conserved low frequency repeat 8)
Comment	Putative DNA transposon (assignment unclear). Eulor8 forms an imperfect 562 bp hairpin, with no tail. Element boundary unclear. Ends unsure, though CAG...CTG make for familiar termini flanked by TA TSDs.
Sequence	CAGCATCCGAGGAGANNCATAAGATTNCAATCTCGAGATTGTAACGAGAATGGGTTAAGTTTGTACCATTTCCCATTCTCGTTACAATCNTCGTCACGAGAATGGATTCATGTTGTGCCATTTTCTGTTCTCGTTACAATCTTTGTCACGAGAACGAGGTATCAGAATTTTAATGCCTAATACGTTCTGTGAAATACGGCAGCGTGCTNTACTGCTTTGACCTTTTCAATATTCTGCATTTTGATTGGCTGGCCATTCCGCCTCTTCCTCACAGGTTANCGAGGCTGTAAACAGGGGAGAACGGGAATGGCCAGCCAATCAAATTACAGAATATTGAAAAGGTCAAAGTAGTACAGCATACTGCTATAATTCACAGAATATATGAGGCATTAAAATTCCGATACCTCATTCTCGTGACAAAGATTGTAACGAGAACAGAAAATGGCACGACATGAATCCGTTCTCGTGACAANGATTGTAACGAGAACGGGAAATGGTACAAANTTAACCCATTCTCGTTACAATCTTAAGATTGTAATCTCGTGGTCCTCCTCAGATGCCG

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
Eulor8	HAP3	242	250	+	15.11	TGATTGGCT
Eulor8	HAP3	313	321	-	15.11	TGATTGGCT
Eulor8	nhr-6	218	225	-	15.08	AAAGGTCA
Eulor8	nhr-6	338	345	+	15.08	AAAGGTCA
Eulor8	WRKY3	215	225	-	14.86	AAAGGTCAAAG
Eulor8	WRKY3	338	348	+	14.86	AAAGGTCAAAG
Eulor8	NR4A1	218	225	-	14.66	AAAGGTCA
Eulor8	NR4A1	338	345	+	14.66	AAAGGTCA
Eulor8	Hr38	218	225	-	14.35	AAAGGTCA
Eulor8	Hr38	338	345	+	14.35	AAAGGTCA

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Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).