Eulor7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000137 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 193 |
| Kimura value | 27.28 |
| Tau index | 0.0000 |
| Description | Eulor7 (Euteleostomi-conserved low frequency repeat 7) |
| Comment | Putative DNA transposon (assignment unclear). Fewer than 20 copies in human, 40-50 copies in alligator. Position (roughly) 38-175 is an imperfect hairpin. |
| Sequence |
TTCATAATATATGGATGGTAGAATTCTACCATTGTTAAGCTGTCAGTCAAAAACCTTGTTATACATGGATGTGACGTCANATCCATGTATAACAAACTTTCCTGTCAATCAAAAATCTTGTTATACATGGATNTGACGTCAGATCCATGTATAACAAGGTTTTTGACTGACAGCTNAGCNGCGGAACACGGCA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor7 | unc-62 | 168 | 175 | - | 13.18 | AGCTGTCA |
| Eulor7 | unc-62 | 38 | 45 | + | 13.18 | AGCTGTCA |
| Eulor7 | TGA10 | 134 | 143 | - | 13.09 | TCTGACGTCA |
| Eulor7 | BZIP18 | 36 | 45 | - | 13.05 | TGACAGCTTA |
| Eulor7 | bZIP910 | 136 | 142 | - | 12.96 | CTGACGT |
| Eulor7 | SOX9 | 29 | 36 | + | 12.94 | CCATTGTT |
| Eulor7 | CREB1 | 134 | 141 | + | 12.71 | TGACGTCA |
| Eulor7 | CREB1 | 134 | 141 | - | 12.71 | TGACGTCA |
| Eulor7 | CREB1 | 72 | 79 | + | 12.71 | TGACGTCA |
| Eulor7 | CREB1 | 72 | 79 | - | 12.71 | TGACGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
