Eulor7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000137 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 193 |
| Kimura value | 27.28 |
| Tau index | 0.0000 |
| Description | Eulor7 (Euteleostomi-conserved low frequency repeat 7) |
| Comment | Putative DNA transposon (assignment unclear). Fewer than 20 copies in human, 40-50 copies in alligator. Position (roughly) 38-175 is an imperfect hairpin. |
| Sequence |
TTCATAATATATGGATGGTAGAATTCTACCATTGTTAAGCTGTCAGTCAAAAACCTTGTTATACATGGATGTGACGTCANATCCATGTATAACAAACTTTCCTGTCAATCAAAAATCTTGTTATACATGGATNTGACGTCAGATCCATGTATAACAAGGTTTTTGACTGACAGCTNAGCNGCGGAACACGGCA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor7 | PBX3 | 101 | 111 | - | 16.66 | TGATTGACAGG |
| Eulor7 | ceh-60 | 103 | 111 | - | 15.89 | TGATTGACA |
| Eulor7 | PKNOX1 | 102 | 111 | - | 15.45 | TGATTGACAG |
| Eulor7 | CREB3L4 | 71 | 79 | + | 15.37 | GTGACGTCA |
| Eulor7 | PBX3 | 164 | 174 | + | 15.09 | TGACTGACAGC |
| Eulor7 | PBX3 | 39 | 49 | - | 15.09 | TGACTGACAGC |
| Eulor7 | PK09021.1 | 134 | 141 | + | 15.00 | TGACGTCA |
| Eulor7 | PK09021.1 | 134 | 141 | - | 15.00 | TGACGTCA |
| Eulor7 | PK09021.1 | 72 | 79 | + | 15.00 | TGACGTCA |
| Eulor7 | PK09021.1 | 72 | 79 | - | 15.00 | TGACGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
