Eulor7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000137 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 193 |
| Kimura value | 27.28 |
| Tau index | 0.0000 |
| Description | Eulor7 (Euteleostomi-conserved low frequency repeat 7) |
| Comment | Putative DNA transposon (assignment unclear). Fewer than 20 copies in human, 40-50 copies in alligator. Position (roughly) 38-175 is an imperfect hairpin. |
| Sequence |
TTCATAATATATGGATGGTAGAATTCTACCATTGTTAAGCTGTCAGTCAAAAACCTTGTTATACATGGATGTGACGTCANATCCATGTATAACAAACTTTCCTGTCAATCAAAAATCTTGTTATACATGGATNTGACGTCAGATCCATGTATAACAAGGTTTTTGACTGACAGCTNAGCNGCGGAACACGGCA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor7 | PKNOX1 | 164 | 173 | + | 14.91 | TGACTGACAG |
| Eulor7 | PKNOX1 | 40 | 49 | - | 14.91 | TGACTGACAG |
| Eulor7 | ZmbZIP54 | 134 | 141 | + | 14.84 | TGACGTCA |
| Eulor7 | ZmbZIP54 | 134 | 141 | - | 14.84 | TGACGTCA |
| Eulor7 | ZmbZIP54 | 72 | 79 | + | 14.84 | TGACGTCA |
| Eulor7 | ZmbZIP54 | 72 | 79 | - | 14.84 | TGACGTCA |
| Eulor7 | TGA5 | 134 | 142 | - | 14.77 | CTGACGTCA |
| Eulor7 | zip-8 | 71 | 79 | + | 14.67 | GTGACGTCA |
| Eulor7 | TGA5 | 71 | 79 | + | 14.58 | GTGACGTCA |
| Eulor7 | Sox5 | 29 | 36 | - | 14.38 | AACAATGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
