Eulor6E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000136 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 292 |
| Kimura value | 25.26 |
| Tau index | 0.0000 |
| Description | Eulor6E (Euteleostomi-conserved low frequency repeat 6E) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50 copies in the human genome. Position (roughly) 1-160 is an imperfect hairpin. Similar to Eulor6D over entire length. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCGGTGCATTTCTGGGNGATTATTGCACGCCTCGGGTGCGTTGCGAGGCACGAGGCCGAAGGCCGAGTGACTTCAACCACCCGAGAAGTGCAATAATCCCTCAGAAATGCACCGCCTGGAGTGTCTTATTGNTATTATGAAATGGAAATTATGNAAACGAAAGAGGAAGAAAGGGNTGATCTGTGCNCTTNCTGAGGATTACTTACATGACTATGACATCACTGACAGTTCTATGTGTGTCCAGAGAATTCTAAAGCCATTGCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6E | TGA5 | 237 | 245 | + | 12.76 | ATGACATCA |
| Eulor6E | PK08602.1 | 133 | 140 | + | 12.72 | GCACCGCC |
| Eulor6E | PK08602.1 | 24 | 31 | - | 12.72 | GCACCGCC |
| Eulor6E | FOSB::JUNB | 237 | 246 | - | 12.70 | GTGATGTCAT |
| Eulor6E | TGA7 | 237 | 246 | + | 12.66 | ATGACATCAC |
| Eulor6E | Ddit3::Cebpa | 280 | 289 | - | 12.56 | ATGCAATGGC |
| Eulor6E | NAC062 | 223 | 229 | - | 12.45 | TAAGTAA |
| Eulor6E | FOSL2::JUNB | 237 | 246 | - | 12.43 | GTGATGTCAT |
| Eulor6E | ZBTB7C | 98 | 105 | + | 12.42 | CAACCACC |
| Eulor6E | FOSL2::JUNB | 237 | 246 | + | 12.42 | ATGACATCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
