Eulor6E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000136 |
|---|---|
| TE superfamily | Crypton |
| TE order | DNA |
| Species | Tetrapoda |
| Length | 292 |
| Kimura value | 25.26 |
| Tau index | 0.0000 |
| Description | Eulor6E (Euteleostomi-conserved low frequency repeat 6E) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50 copies in the human genome. Position (roughly) 1-160 is an imperfect hairpin. Similar to Eulor6D over entire length. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCGGTGCATTTCTGGGNGATTATTGCACGCCTCGGGTGCGTTGCGAGGCACGAGGCCGAAGGCCGAGTGACTTCAACCACCCGAGAAGTGCAATAATCCCTCAGAAATGCACCGCCTGGAGTGTCTTATTGNTATTATGAAATGGAAATTATGNAAACGAAAGAGGAAGAAAGGGNTGATCTGTGCNCTTNCTGAGGATTACTTACATGACTATGACATCACTGACAGTTCTATGTGTGTCCAGAGAATTCTAAAGCCATTGCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6E | SPIC | 183 | 195 | + | 16.52 | GAAAGAGGAAGAA |
| Eulor6E | JUND | 237 | 247 | - | 15.79 | AGTGATGTCAT |
| Eulor6E | SIZF2 | 245 | 253 | + | 15.69 | ACTGACAGT |
| Eulor6E | ZmbZIP57 | 237 | 246 | - | 15.22 | GTGATGTCAT |
| Eulor6E | JUN | 237 | 246 | - | 15.20 | GTGATGTCAT |
| Eulor6E | TGA6 | 237 | 246 | - | 15.07 | GTGATGTCAT |
| Eulor6E | CEBPG | 283 | 292 | - | 14.79 | ATTATGCAAT |
| Eulor6E | cebp-1 | 157 | 167 | - | 14.76 | ATTTCATAATA |
| Eulor6E | ZmbZIP25 | 236 | 245 | + | 14.73 | TATGACATCA |
| Eulor6E | NFIL3 | 283 | 291 | - | 14.71 | TTATGCAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
