Eulor6E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000136 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 292 |
| Kimura value | 25.26 |
| Tau index | 0.0000 |
| Description | Eulor6E (Euteleostomi-conserved low frequency repeat 6E) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50 copies in the human genome. Position (roughly) 1-160 is an imperfect hairpin. Similar to Eulor6D over entire length. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCGGTGCATTTCTGGGNGATTATTGCACGCCTCGGGTGCGTTGCGAGGCACGAGGCCGAAGGCCGAGTGACTTCAACCACCCGAGAAGTGCAATAATCCCTCAGAAATGCACCGCCTGGAGTGTCTTATTGNTATTATGAAATGGAAATTATGNAAACGAAAGAGGAAGAAAGGGNTGATCTGTGCNCTTNCTGAGGATTACTTACATGACTATGACATCACTGACAGTTCTATGTGTGTCCAGAGAATTCTAAAGCCATTGCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6E | FOSL2::JUND | 237 | 246 | + | 13.45 | ATGACATCAC |
| Eulor6E | Atf3 | 237 | 246 | + | 13.44 | ATGACATCAC |
| Eulor6E | Xrp1 | 283 | 292 | - | 13.39 | ATTATGCAAT |
| Eulor6E | ceh-18 | 285 | 292 | + | 13.35 | TGCATAAT |
| Eulor6E | Atf3 | 237 | 246 | - | 13.21 | GTGATGTCAT |
| Eulor6E | Creb5 | 237 | 246 | + | 13.20 | ATGACATCAC |
| Eulor6E | EcR::usp | 110 | 124 | - | 12.95 | GGGATTATTGCACTT |
| Eulor6E | JDP2 | 237 | 246 | + | 12.94 | ATGACATCAC |
| Eulor6E | eor-1 | 184 | 196 | + | 12.87 | AAAGAGGAAGAAA |
| Eulor6E | MYB60 | 97 | 106 | + | 12.87 | TCAACCACCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
