Eulor6E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000136 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 292 |
| Kimura value | 25.26 |
| Tau index | 0.0000 |
| Description | Eulor6E (Euteleostomi-conserved low frequency repeat 6E) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50 copies in the human genome. Position (roughly) 1-160 is an imperfect hairpin. Similar to Eulor6D over entire length. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCGGTGCATTTCTGGGNGATTATTGCACGCCTCGGGTGCGTTGCGAGGCACGAGGCCGAAGGCCGAGTGACTTCAACCACCCGAGAAGTGCAATAATCCCTCAGAAATGCACCGCCTGGAGTGTCTTATTGNTATTATGAAATGGAAATTATGNAAACGAAAGAGGAAGAAAGGGNTGATCTGTGCNCTTNCTGAGGATTACTTACATGACTATGACATCACTGACAGTTCTATGTGTGTCCAGAGAATTCTAAAGCCATTGCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6E | Spi1 | 184 | 196 | + | 14.67 | AAAGAGGAAGAAA |
| Eulor6E | ZmbZIP72 | 236 | 245 | + | 14.53 | TATGACATCA |
| Eulor6E | SIZF2 | 245 | 253 | - | 14.50 | ACTGTCAGT |
| Eulor6E | CREB1 | 238 | 245 | - | 14.43 | TGATGTCA |
| Eulor6E | HLF | 283 | 291 | - | 14.39 | TTATGCAAT |
| Eulor6E | PI | 181 | 194 | + | 14.27 | ACGAAAGAGGAAGA |
| Eulor6E | Pdp1 | 284 | 291 | - | 14.17 | TTATGCAA |
| Eulor6E | Nfatc2 | 165 | 172 | + | 14.03 | AATGGAAA |
| Eulor6E | CEBPA | 283 | 292 | + | 13.86 | ATTGCATAAT |
| Eulor6E | ATF2 | 237 | 246 | - | 13.64 | GTGATGTCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
