Eulor6D
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000135 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 302 |
| Kimura value | 28.95 |
| Tau index | 0.0000 |
| Description | Eulor6D (Euteleostomi-conserved low frequency repeat 6D) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~100 copies in the human genome, ~100 in platypus, also detected in Xenopus. Position (roughly) 1-162 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCAGTGCATTTCTGGGCGATTATAGCACGCCTCGGGTGGCGTTATAAGGCACGAGGCCGAAGGCCGAGTGACTTTAACCACCCGAGAAGTGCAATAATCGCCCNGAAATGCACTGCCTGGAGTGTCTTATTGCTATTATGAAATGGAATTTATACATAAAAATAAGGAAAACAGTCAGACCCGTGCATTTACTGGGCATTATTGACATGGGCGTGACATCACCGACAGCCAATCAGAAANCTCCGNTTGCGTCCGGNGTTCTAAAGCCGTTTCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6D | CG3065 | 231 | 241 | - | 13.76 | GTCACGCCCAT |
| Eulor6D | Atf3 | 237 | 246 | + | 13.75 | GTGACATCAC |
| Eulor6D | ZmbZIP72 | 236 | 245 | + | 13.67 | CGTGACATCA |
| Eulor6D | Atf3 | 237 | 246 | - | 13.60 | GTGATGTCAC |
| Eulor6D | TGA9 | 237 | 247 | - | 13.52 | GGTGATGTCAC |
| Eulor6D | ARF1 | 245 | 251 | + | 13.49 | ACCGACA |
| Eulor6D | ZmbZIP25 | 236 | 245 | + | 13.45 | CGTGACATCA |
| Eulor6D | JUN | 237 | 246 | - | 13.39 | GTGATGTCAC |
| Eulor6D | TGA6 | 237 | 246 | - | 13.27 | GTGATGTCAC |
| Eulor6D | ERF021 | 244 | 251 | + | 13.25 | CACCGACA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
