Eulor6D
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000135 |
|---|---|
| TE superfamily | Crypton |
| TE order | DNA |
| Species | Tetrapoda |
| Length | 302 |
| Kimura value | 28.95 |
| Tau index | 0.0000 |
| Description | Eulor6D (Euteleostomi-conserved low frequency repeat 6D) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~100 copies in the human genome, ~100 in platypus, also detected in Xenopus. Position (roughly) 1-162 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCAGTGCATTTCTGGGCGATTATAGCACGCCTCGGGTGGCGTTATAAGGCACGAGGCCGAAGGCCGAGTGACTTTAACCACCCGAGAAGTGCAATAATCGCCCNGAAATGCACTGCCTGGAGTGTCTTATTGCTATTATGAAATGGAATTTATACATAAAAATAAGGAAAACAGTCAGACCCGTGCATTTACTGGGCATTATTGACATGGGCGTGACATCACCGACAGCCAATCAGAAANCTCCGNTTGCGTCCGGNGTTCTAAAGCCGTTTCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6D | hkb | 232 | 240 | + | 15.91 | TGGGCGTGA |
| Eulor6D | ERF035 | 243 | 251 | - | 15.77 | TGTCGGTGA |
| Eulor6D | ERF023 | 243 | 251 | - | 15.77 | TGTCGGTGA |
| Eulor6D | ERF043 | 243 | 251 | + | 15.67 | TCACCGACA |
| Eulor6D | ERF037 | 243 | 251 | + | 15.42 | TCACCGACA |
| Eulor6D | RAP2-1 | 244 | 251 | + | 15.41 | CACCGACA |
| Eulor6D | ERF038 | 244 | 251 | + | 15.36 | CACCGACA |
| Eulor6D | ERF015 | 244 | 251 | + | 15.33 | CACCGACA |
| Eulor6D | ERF019 | 243 | 251 | + | 15.31 | TCACCGACA |
| Eulor6D | ERF034 | 243 | 251 | - | 15.24 | TGTCGGTGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
