Eulor6D
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000135 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 302 |
| Kimura value | 28.95 |
| Tau index | 0.0000 |
| Description | Eulor6D (Euteleostomi-conserved low frequency repeat 6D) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~100 copies in the human genome, ~100 in platypus, also detected in Xenopus. Position (roughly) 1-162 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCAGTGCATTTCTGGGCGATTATAGCACGCCTCGGGTGGCGTTATAAGGCACGAGGCCGAAGGCCGAGTGACTTTAACCACCCGAGAAGTGCAATAATCGCCCNGAAATGCACTGCCTGGAGTGTCTTATTGCTATTATGAAATGGAATTTATACATAAAAATAAGGAAAACAGTCAGACCCGTGCATTTACTGGGCATTATTGACATGGGCGTGACATCACCGACAGCCAATCAGAAANCTCCGNTTGCGTCCGGNGTTCTAAAGCCGTTTCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6D | CREB1 | 238 | 245 | - | 14.43 | TGATGTCA |
| Eulor6D | ERF013 | 243 | 251 | - | 14.41 | TGTCGGTGA |
| Eulor6D | JUND | 237 | 247 | - | 14.36 | GGTGATGTCAC |
| Eulor6D | nfya-1 | 251 | 260 | + | 14.30 | AGCCAATCAG |
| Eulor6D | CREM | 237 | 246 | + | 14.20 | GTGACATCAC |
| Eulor6D | CREM | 237 | 246 | - | 14.20 | GTGATGTCAC |
| Eulor6D | PHYPADRAFT_182268 | 244 | 250 | - | 14.02 | GTCGGTG |
| Eulor6D | estExt_gwp_gw1.C_550163 | 244 | 250 | + | 14.02 | CACCGAC |
| Eulor6D | ERF011 | 244 | 250 | + | 13.88 | CACCGAC |
| Eulor6D | RPN4 | 59 | 65 | + | 13.80 | GGTGGCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
