Eulor6D
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000135 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 302 |
| Kimura value | 28.95 |
| Tau index | 0.0000 |
| Description | Eulor6D (Euteleostomi-conserved low frequency repeat 6D) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~100 copies in the human genome, ~100 in platypus, also detected in Xenopus. Position (roughly) 1-162 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGACACGACAGGCAGTGCATTTCTGGGCGATTATAGCACGCCTCGGGTGGCGTTATAAGGCACGAGGCCGAAGGCCGAGTGACTTTAACCACCCGAGAAGTGCAATAATCGCCCNGAAATGCACTGCCTGGAGTGTCTTATTGCTATTATGAAATGGAATTTATACATAAAAATAAGGAAAACAGTCAGACCCGTGCATTTACTGGGCATTATTGACATGGGCGTGACATCACCGACAGCCAATCAGAAANCTCCGNTTGCGTCCGGNGTTCTAAAGCCGTTTCATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6D | GLI3 | 99 | 113 | + | 0.42 | TAACCACCCGAGAAG |
| Eulor6D | ZNF410 | 155 | 170 | - | -4.60 | CCATTTCATAATAGCA |
| Eulor6D | DAL81 | 49 | 67 | + | -52.00 | GCACGCCTCGGGTGGCGTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
