Eulor6C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000134 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 208 |
| Kimura value | 24.05 |
| Tau index | 0.0000 |
| Description | Eulor6C (Euteleostomi-conserved low frequency repeat 6C) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TTAATATGGCATTAAGACACGACAGGGCGTGTTTTANTGGTCCATTAATACATGCCTCGGGTGCGTTGCGAGGCACAAGGCTNNAGGCCAAGTACTTCGACCACTCGAGGCATATATTAATGGNCCAATAAAGCACGCCCCGGAGTGTCTTAATACTANCANAATACGGCTCTTTAATTTCCTATTNAATTTTNAAGGNTTCTTTTTA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6C | dar1 | 23 | 33 | - | 7.87 | AACACGCCCTG |
| Eulor6C | TP53 | 16 | 33 | + | 7.86 | GACACGACAGGGCGTGTT |
| Eulor6C | ZIC5 | 17 | 31 | - | 7.09 | CACGCCCTGTCGTGT |
| Eulor6C | dar1 | 132 | 142 | + | 7.02 | AGCACGCCCCG |
| Eulor6C | ZIC5 | 134 | 148 | + | 4.45 | CACGCCCCGGAGTGT |
| Eulor6C | TP63 | 16 | 33 | - | -0.93 | AACACGCCCTGTCGTGTC |
| Eulor6C | DAL81 | 50 | 68 | + | -52.00 | ACATGCCTCGGGTGCGTTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
