Eulor6C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000134 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 208 |
| Kimura value | 24.05 |
| Tau index | 0.0000 |
| Description | Eulor6C (Euteleostomi-conserved low frequency repeat 6C) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TTAATATGGCATTAAGACACGACAGGGCGTGTTTTANTGGTCCATTAATACATGCCTCGGGTGCGTTGCGAGGCACAAGGCTNNAGGCCAAGTACTTCGACCACTCGAGGCATATATTAATGGNCCAATAAAGCACGCCCCGGAGTGTCTTAATACTANCANAATACGGCTCTTTAATTTCCTATTNAATTTTNAAGGNTTCTTTTTA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6C | tin | 101 | 109 | - | 14.39 | CTCGAGTGG |
| Eulor6C | hkb | 133 | 141 | - | 14.19 | GGGGCGTGC |
| Eulor6C | Hoxa13 | 125 | 132 | + | 14.02 | CCAATAAA |
| Eulor6C | sptf-3 | 135 | 141 | + | 13.23 | ACGCCCC |
| Eulor6C | Gsx | 166 | 185 | + | 13.22 | ACGGCTCTTTAATTTCCTAT |
| Eulor6C | Klf5-like | 134 | 140 | + | 12.76 | CACGCCC |
| Eulor6C | Klf5-like | 25 | 31 | - | 12.76 | CACGCCC |
| Eulor6C | Hoxd13 | 126 | 132 | + | 12.73 | CAATAAA |
| Eulor6C | KLF6 | 133 | 141 | + | 12.58 | GCACGCCCC |
| Eulor6C | luna | 25 | 33 | - | 12.46 | AACACGCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
