Eulor6C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000134 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 208 |
| Kimura value | 24.05 |
| Tau index | 0.0000 |
| Description | Eulor6C (Euteleostomi-conserved low frequency repeat 6C) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TTAATATGGCATTAAGACACGACAGGGCGTGTTTTANTGGTCCATTAATACATGCCTCGGGTGCGTTGCGAGGCACAAGGCTNNAGGCCAAGTACTTCGACCACTCGAGGCATATATTAATGGNCCAATAAAGCACGCCCCGGAGTGTCTTAATACTANCANAATACGGCTCTTTAATTTCCTATTNAATTTTNAAGGNTTCTTTTTA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6C | NKX2-8 | 101 | 108 | + | 11.12 | CCACTCGA |
| Eulor6C | KLF2 | 133 | 140 | + | 11.07 | GCACGCCC |
| Eulor6C | hkb | 24 | 32 | + | 11.06 | AGGGCGTGT |
| Eulor6C | tup | 117 | 123 | + | 10.97 | TTAATGG |
| Eulor6C | tup | 42 | 48 | - | 10.97 | TTAATGG |
| Eulor6C | NAC92 | 17 | 24 | + | 10.90 | ACACGACA |
| Eulor6C | KLF3 | 25 | 34 | - | 10.89 | AAACACGCCC |
| Eulor6C | SP9 | 133 | 142 | + | 10.89 | GCACGCCCCG |
| Eulor6C | ZIC4 | 18 | 31 | - | 10.75 | CACGCCCTGTCGTG |
| Eulor6C | Cdx | 125 | 132 | - | 10.75 | TTTATTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
