Eulor6C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000134 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 208 |
| Kimura value | 24.05 |
| Tau index | 0.0000 |
| Description | Eulor6C (Euteleostomi-conserved low frequency repeat 6C) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TTAATATGGCATTAAGACACGACAGGGCGTGTTTTANTGGTCCATTAATACATGCCTCGGGTGCGTTGCGAGGCACAAGGCTNNAGGCCAAGTACTTCGACCACTCGAGGCATATATTAATGGNCCAATAAAGCACGCCCCGGAGTGTCTTAATACTANCANAATACGGCTCTTTAATTTCCTATTNAATTTTNAAGGNTTCTTTTTA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6C | KLF6 | 24 | 32 | - | 12.42 | ACACGCCCT |
| Eulor6C | ceh-22 | 101 | 109 | + | 12.16 | CCACTCGAG |
| Eulor6C | Klf3/8/12 | 25 | 33 | - | 12.16 | AACACGCCC |
| Eulor6C | SPT2 | 170 | 179 | - | 12.09 | AATTAAAGAG |
| Eulor6C | KLF14 | 133 | 141 | - | 12.04 | GGGGCGTGC |
| Eulor6C | KLF3 | 131 | 140 | + | 11.62 | AAGCACGCCC |
| Eulor6C | Sp1 | 134 | 142 | + | 11.44 | CACGCCCCG |
| Eulor6C | NKX2-4 | 101 | 108 | + | 11.38 | CCACTCGA |
| Eulor6C | KLF2 | 25 | 32 | - | 11.36 | ACACGCCC |
| Eulor6C | luna | 132 | 140 | + | 11.31 | AGCACGCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
