Eulor6B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000133 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 338 |
| Kimura value | 28.22 |
| Tau index | 0.0000 |
| Description | Eulor6B (Euteleostomi-conserved low frequency repeat 6B) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50-100 copies in the human genome, ~100 in platypus; also found in Xenopus. Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGGCACGACAGGGAGTGTGGTTATCATGAGATAATCACACCCCTGGGGCGTTACGAGGCACGAGGCGCAGCCGAGTGCCTCTAATCCCCCAGGGGTGTGATTATCTCATGATAACCACACCCCCTGGAGTTGCCTTATTGCTATTATAAAAAGTCTTTATTGTGGAGAAAAAATGTATTTTTGTGCTGGAAGAAGATGAAGTTGGCAGTTTAGAATGTTGAACAGCAGTTTCAGCTGAGCTNTGTGGTTCACATAGATTAATCTACCCCTTTAGAATATTCGTCAGCCAATCAGAATGCTCCCTCAATCCAAGCAGTTTNATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6B | CUP2 | 191 | 201 | - | 13.40 | CAGCACAAAAA |
| Eulor6B | SP9 | 128 | 137 | + | 13.35 | CCACACCCCC |
| Eulor6B | KLF1 | 128 | 135 | - | 13.29 | GGGTGTGG |
| Eulor6B | sptf-3 | 58 | 64 | - | 13.23 | ACGCCCC |
| Eulor6B | KLF2 | 128 | 135 | + | 13.22 | CCACACCC |
| Eulor6B | TFAP2B | 53 | 63 | + | 13.18 | CCCCTGGGGCG |
| Eulor6B | PHL7 | 283 | 295 | + | 13.12 | TTTAGAATATTCG |
| Eulor6B | PHL1 | 284 | 295 | + | 13.03 | TTAGAATATTCG |
| Eulor6B | TFAP2E | 54 | 62 | - | 13.00 | GCCCCAGGG |
| Eulor6B | Adf1 | 79 | 86 | - | 12.95 | CGGCTGCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
