Eulor6B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000133 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 338 |
| Kimura value | 28.22 |
| Tau index | 0.0000 |
| Description | Eulor6B (Euteleostomi-conserved low frequency repeat 6B) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50-100 copies in the human genome, ~100 in platypus; also found in Xenopus. Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGGCACGACAGGGAGTGTGGTTATCATGAGATAATCACACCCCTGGGGCGTTACGAGGCACGAGGCGCAGCCGAGTGCCTCTAATCCCCCAGGGGTGTGATTATCTCATGATAACCACACCCCCTGGAGTTGCCTTATTGCTATTATAAAAAGTCTTTATTGTGGAGAAAAAATGTATTTTTGTGCTGGAAGAAGATGAAGTTGGCAGTTTAGAATGTTGAACAGCAGTTTCAGCTGAGCTNTGTGGTTCACATAGATTAATCTACCCCTTTAGAATATTCGTCAGCCAATCAGAATGCTCCCTCAATCCAAGCAGTTTNATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6B | dar1 | 127 | 137 | + | 16.10 | ACCACACCCCC |
| Eulor6B | KLF11 | 128 | 137 | + | 15.87 | CCACACCCCC |
| Eulor6B | HAP5 | 299 | 312 | - | 15.82 | GCATTCTGATTGGC |
| Eulor6B | KLF16 | 127 | 137 | + | 15.74 | ACCACACCCCC |
| Eulor6B | EFM | 286 | 294 | + | 15.24 | AGAATATTC |
| Eulor6B | KLF9 | 127 | 137 | + | 15.18 | ACCACACCCCC |
| Eulor6B | HAP3 | 298 | 306 | - | 15.11 | TGATTGGCT |
| Eulor6B | SP8 | 128 | 138 | + | 14.97 | CCACACCCCCT |
| Eulor6B | PHL11 | 286 | 295 | - | 14.76 | CGAATATTCT |
| Eulor6B | PHL11 | 286 | 295 | + | 14.75 | AGAATATTCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
