Eulor6B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000133 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 338 |
| Kimura value | 28.22 |
| Tau index | 0.0000 |
| Description | Eulor6B (Euteleostomi-conserved low frequency repeat 6B) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50-100 copies in the human genome, ~100 in platypus; also found in Xenopus. Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGGCACGACAGGGAGTGTGGTTATCATGAGATAATCACACCCCTGGGGCGTTACGAGGCACGAGGCGCAGCCGAGTGCCTCTAATCCCCCAGGGGTGTGATTATCTCATGATAACCACACCCCCTGGAGTTGCCTTATTGCTATTATAAAAAGTCTTTATTGTGGAGAAAAAATGTATTTTTGTGCTGGAAGAAGATGAAGTTGGCAGTTTAGAATGTTGAACAGCAGTTTCAGCTGAGCTNTGTGGTTCACATAGATTAATCTACCCCTTTAGAATATTCGTCAGCCAATCAGAATGCTCCCTCAATCCAAGCAGTTTNATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6B | PHL4 | 286 | 295 | - | 14.03 | CGAATATTCT |
| Eulor6B | KLF6 | 128 | 136 | + | 13.91 | CCACACCCC |
| Eulor6B | EBF1 | 52 | 62 | - | 13.77 | GCCCCAGGGGT |
| Eulor6B | Kr | 277 | 285 | + | 13.70 | TACCCCTTT |
| Eulor6B | lmd | 131 | 142 | + | 13.66 | CACCCCCTGGAG |
| Eulor6B | PHL1 | 286 | 297 | - | 13.62 | GACGAATATTCT |
| Eulor6B | Ebf4 | 52 | 62 | - | 13.52 | GCCCCAGGGGT |
| Eulor6B | EBF1 | 99 | 109 | + | 13.49 | CCCCCAGGGGT |
| Eulor6B | KLF10 | 128 | 136 | - | 13.47 | GGGGTGTGG |
| Eulor6B | PITX2 | 94 | 101 | + | 13.40 | CTAATCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
