Eulor6B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000133 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 338 |
| Kimura value | 28.22 |
| Tau index | 0.0000 |
| Description | Eulor6B (Euteleostomi-conserved low frequency repeat 6B) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50-100 copies in the human genome, ~100 in platypus; also found in Xenopus. Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGGCACGACAGGGAGTGTGGTTATCATGAGATAATCACACCCCTGGGGCGTTACGAGGCACGAGGCGCAGCCGAGTGCCTCTAATCCCCCAGGGGTGTGATTATCTCATGATAACCACACCCCCTGGAGTTGCCTTATTGCTATTATAAAAAGTCTTTATTGTGGAGAAAAAATGTATTTTTGTGCTGGAAGAAGATGAAGTTGGCAGTTTAGAATGTTGAACAGCAGTTTCAGCTGAGCTNTGTGGTTCACATAGATTAATCTACCCCTTTAGAATATTCGTCAGCCAATCAGAATGCTCCCTCAATCCAAGCAGTTTNATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6B | ZNF281 | 128 | 137 | - | 6.94 | GGGGGTGTGG |
| Eulor6B | Tcf21 | 234 | 243 | - | 6.22 | AACTGCTGTT |
| Eulor6B | Tcf21 | 234 | 243 | + | 6.21 | AACAGCAGTT |
| Eulor6B | HSF1 | 282 | 294 | + | 6.11 | CTTTAGAATATTC |
| Eulor6B | ZIC5 | 131 | 145 | + | 4.77 | CACCCCCTGGAGTTG |
| Eulor6B | KLF13 | 99 | 115 | - | 3.60 | AATCACACCCCTGGGGG |
| Eulor6B | HES7 | 69 | 80 | + | 2.03 | AGGCACGAGGCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
