Eulor6B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000133 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 338 |
| Kimura value | 28.22 |
| Tau index | 0.0000 |
| Description | Eulor6B (Euteleostomi-conserved low frequency repeat 6B) |
| Comment | Putative DNA transposon (assignment unclear). Present in ~50-100 copies in the human genome, ~100 in platypus; also found in Xenopus. Position (roughly) 1-160 is an imperfect hairpin. |
| Sequence |
TAATTAAGCAATAAGGCACGACAGGGAGTGTGGTTATCATGAGATAATCACACCCCTGGGGCGTTACGAGGCACGAGGCGCAGCCGAGTGCCTCTAATCCCCCAGGGGTGTGATTATCTCATGATAACCACACCCCCTGGAGTTGCCTTATTGCTATTATAAAAAGTCTTTATTGTGGAGAAAAAATGTATTTTTGTGCTGGAAGAAGATGAAGTTGGCAGTTTAGAATGTTGAACAGCAGTTTCAGCTGAGCTNTGTGGTTCACATAGATTAATCTACCCCTTTAGAATATTCGTCAGCCAATCAGAATGCTCCCTCAATCCAAGCAGTTTNATAAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6B | PHL4 | 286 | 295 | + | 14.72 | AGAATATTCG |
| Eulor6B | KAN4 | 287 | 294 | + | 14.59 | GAATATTC |
| Eulor6B | KAN4 | 287 | 294 | - | 14.59 | GAATATTC |
| Eulor6B | NFYA | 300 | 307 | + | 14.54 | CCAATCAG |
| Eulor6B | Klf3/8/12 | 127 | 135 | + | 14.50 | ACCACACCC |
| Eulor6B | SP3 | 127 | 137 | + | 14.44 | ACCACACCCCC |
| Eulor6B | KLF17 | 21 | 34 | - | 14.34 | ACCACACTCCCTGT |
| Eulor6B | nfya-1 | 298 | 307 | + | 14.30 | AGCCAATCAG |
| Eulor6B | luna | 127 | 135 | + | 14.18 | ACCACACCC |
| Eulor6B | PHL7 | 286 | 298 | - | 14.11 | TGACGAATATTCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
