Eulor6A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000132 |
|---|---|
| TE superfamily | Crypton |
| TE order | DNA |
| Species | Tetrapoda |
| Length | 248 |
| Kimura value | 22.46 |
| Tau index | 0.0000 |
| Description | Eulor6A (Euteleostomi-conserved low frequency repeat 6A) |
| Comment | Putative DNA transposon (assignment unclear). Renamed from Eulor6 to Eulor6A. Position (roughly) 1-153 is an imperfect hairpin. |
| Sequence |
TTAATTAAGCAATAAGACACGACAGGGCGTGAATTATGGCGTAATAATTCACGCCTAGTGTGTTGCTAGGCACGAGGCCGAAGGCCGAGTGCCGTCAACGCAACTAGGCGTGAATTATTACGCCGTAATTCACGCCCTGGAGTGTCTTATTGCGATTATAAAATTTTATTATTAAAGGTTATTTTNAAAAAATATTTATATATGTTAATTGAGNGANGGNGCTCATAAATTCTGAACAGAGAATTATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6A | TBX3 | 48 | 56 | - | 12.58 | AGGCGTGAA |
| Eulor6A | CG11617 | 202 | 208 | - | 12.44 | TTAACAT |
| Eulor6A | TBX18 | 106 | 114 | + | 12.39 | AGGCGTGAA |
| Eulor6A | TBX18 | 48 | 56 | - | 12.39 | AGGCGTGAA |
| Eulor6A | FoxB | 189 | 199 | - | 12.38 | ATAAATATTTT |
| Eulor6A | Hmx | 205 | 211 | + | 12.35 | TTAATTG |
| Eulor6A | HNF4 | 75 | 88 | - | 12.33 | TCGGCCTTCGGCCT |
| Eulor6A | CG34031 | 205 | 211 | + | 12.15 | TTAATTG |
| Eulor6A | PHOX2B | 160 | 171 | - | 12.13 | TAATAAAATTTT |
| Eulor6A | POU2F1 | 201 | 209 | + | 12.09 | TATGTTAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
