Eulor6A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000132 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 248 |
| Kimura value | 22.46 |
| Tau index | 0.0000 |
| Description | Eulor6A (Euteleostomi-conserved low frequency repeat 6A) |
| Comment | Putative DNA transposon (assignment unclear). Renamed from Eulor6 to Eulor6A. Position (roughly) 1-153 is an imperfect hairpin. |
| Sequence |
TTAATTAAGCAATAAGACACGACAGGGCGTGAATTATGGCGTAATAATTCACGCCTAGTGTGTTGCTAGGCACGAGGCCGAAGGCCGAGTGCCGTCAACGCAACTAGGCGTGAATTATTACGCCGTAATTCACGCCCTGGAGTGTCTTATTGCGATTATAAAATTTTATTATTAAAGGTTATTTTNAAAAAATATTTATATATGTTAATTGAGNGANGGNGCTCATAAATTCTGAACAGAGAATTATG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6A | Rfx6 | 62 | 70 | - | 16.32 | CCTAGCAAC |
| Eulor6A | NAC029 | 98 | 105 | + | 14.58 | ACGCAACT |
| Eulor6A | NAC002 | 98 | 105 | + | 14.34 | ACGCAACT |
| Eulor6A | hkb | 105 | 113 | + | 14.04 | TAGGCGTGA |
| Eulor6A | hkb | 130 | 138 | - | 14.04 | AGGGCGTGA |
| Eulor6A | hkb | 24 | 32 | + | 14.04 | AGGGCGTGA |
| Eulor6A | hkb | 49 | 57 | - | 14.04 | TAGGCGTGA |
| Eulor6A | Xrp1 | 36 | 45 | + | 13.85 | ATGGCGTAAT |
| Eulor6A | LMX1B | 1 | 8 | + | 13.84 | TTAATTAA |
| Eulor6A | LMX1B | 1 | 8 | - | 13.84 | TTAATTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
