Eulor6A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000132 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 248 |
| Kimura value | 22.46 |
| Tau index | 0.0000 |
| Description | Eulor6A (Euteleostomi-conserved low frequency repeat 6A) |
| Comment | Putative DNA transposon (assignment unclear). Renamed from Eulor6 to Eulor6A. Position (roughly) 1-153 is an imperfect hairpin. |
| Sequence |
TTAATTAAGCAATAAGACACGACAGGGCGTGAATTATGGCGTAATAATTCACGCCTAGTGTGTTGCTAGGCACGAGGCCGAAGGCCGAGTGCCGTCAACGCAACTAGGCGTGAATTATTACGCCGTAATTCACGCCCTGGAGTGTCTTATTGCGATTATAAAATTTTATTATTAAAGGTTATTTTNAAAAAATATTTATATATGTTAATTGAGNGANGGNGCTCATAAATTCTGAACAGAGAATTATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6A | ceh-14 | 1 | 8 | - | 13.12 | TTAATTAA |
| Eulor6A | POU3F1 | 200 | 209 | + | 13.02 | ATATGTTAAT |
| Eulor6A | ATHB-13 | 113 | 120 | - | 12.84 | TAATAATT |
| Eulor6A | ATHB-13 | 42 | 49 | + | 12.84 | TAATAATT |
| Eulor6A | Klf5-like | 131 | 137 | + | 12.76 | CACGCCC |
| Eulor6A | Klf5-like | 25 | 31 | - | 12.76 | CACGCCC |
| Eulor6A | Alx1 | 1 | 8 | + | 12.74 | TTAATTAA |
| Eulor6A | Alx1 | 1 | 8 | - | 12.74 | TTAATTAA |
| Eulor6A | POU3F4 | 201 | 209 | + | 12.70 | TATGTTAAT |
| Eulor6A | TBX3 | 106 | 114 | + | 12.58 | AGGCGTGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
