Eulor6A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000132 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 248 |
| Kimura value | 22.46 |
| Tau index | 0.0000 |
| Description | Eulor6A (Euteleostomi-conserved low frequency repeat 6A) |
| Comment | Putative DNA transposon (assignment unclear). Renamed from Eulor6 to Eulor6A. Position (roughly) 1-153 is an imperfect hairpin. |
| Sequence |
TTAATTAAGCAATAAGACACGACAGGGCGTGAATTATGGCGTAATAATTCACGCCTAGTGTGTTGCTAGGCACGAGGCCGAAGGCCGAGTGCCGTCAACGCAACTAGGCGTGAATTATTACGCCGTAATTCACGCCCTGGAGTGTCTTATTGCGATTATAAAATTTTATTATTAAAGGTTATTTTNAAAAAATATTTATATATGTTAATTGAGNGANGGNGCTCATAAATTCTGAACAGAGAATTATG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6A | FOXB1 | 192 | 202 | - | 13.62 | TATATAAATAT |
| Eulor6A | FOXC1 | 192 | 202 | - | 13.52 | TATATAAATAT |
| Eulor6A | ATHB-20 | 113 | 120 | - | 13.35 | TAATAATT |
| Eulor6A | ATHB-20 | 42 | 49 | + | 13.35 | TAATAATT |
| Eulor6A | ATHB-16 | 113 | 120 | - | 13.30 | TAATAATT |
| Eulor6A | ATHB-16 | 42 | 49 | + | 13.30 | TAATAATT |
| Eulor6A | POU3F2 | 200 | 211 | + | 13.27 | ATATGTTAATTG |
| Eulor6A | POU3F3 | 199 | 211 | + | 13.16 | TATATGTTAATTG |
| Eulor6A | vri | 35 | 45 | + | 13.13 | TATGGCGTAAT |
| Eulor6A | ceh-14 | 1 | 8 | + | 13.12 | TTAATTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
