Eulor6A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000132 |
|---|---|
| TE superfamily | Crypton |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 248 |
| Kimura value | 22.46 |
| Tau index | 0.0000 |
| Description | Eulor6A (Euteleostomi-conserved low frequency repeat 6A) |
| Comment | Putative DNA transposon (assignment unclear). Renamed from Eulor6 to Eulor6A. Position (roughly) 1-153 is an imperfect hairpin. |
| Sequence |
TTAATTAAGCAATAAGACACGACAGGGCGTGAATTATGGCGTAATAATTCACGCCTAGTGTGTTGCTAGGCACGAGGCCGAAGGCCGAGTGCCGTCAACGCAACTAGGCGTGAATTATTACGCCGTAATTCACGCCCTGGAGTGTCTTATTGCGATTATAAAATTTTATTATTAAAGGTTATTTTNAAAAAATATTTATATATGTTAATTGAGNGANGGNGCTCATAAATTCTGAACAGAGAATTATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor6A | HNF4A | 74 | 87 | + | 5.23 | GAGGCCGAAGGCCG |
| Eulor6A | RFX4 | 62 | 74 | - | 4.87 | CGTGCCTAGCAAC |
| Eulor6A | Rfx | 62 | 74 | + | 2.92 | GTTGCTAGGCACG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
