Eulor5A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000130 |
|---|---|
| TE superfamily | Crypton-A |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 316 |
| Kimura value | 28.98 |
| Tau index | 0.0000 |
| Description | Eulor5A (Euteleostomi-conserved low frequency repeat 5A) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. The hairpin of Eulor5A/B and Eulor6A-E are at the same position and up to 70% similar. The termini are also similar. |
| Sequence |
CTTAATTAAGCAATAACGATCGAGGCGCAGGGCATTTCCTGGGGATTAATGACCGGCTGGGAGGAGTTGATGGCCCGAGGCANAGCCGAGGGCCATTAACCCCAGCCGGTCATTAATCCCCAGGAAATGCCCTGCGCCGAGGTCGTTATTGCTATTATAAGCTGAAAACGNAGAAACGAACAGGCGTATGGATTTTTTTTATGGGTGATGCAGTTTCAATTGGTATGTACAGGGCATTTCCGGAGAATTAATGCCCTGTACATTAGCCAATCAGATTGCTCGAATCATCTCTCAACATTCCATTCGGCTTATAATT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor5A | hb | 195 | 204 | - | 13.24 | CCATAAAAAA |
| Eulor5A | TEAD1 | 295 | 303 | + | 13.21 | ACATTCCAT |
| Eulor5A | TEAD3 | 295 | 302 | + | 13.20 | ACATTCCA |
| Eulor5A | ceh-14 | 2 | 9 | + | 13.12 | TTAATTAA |
| Eulor5A | ceh-14 | 2 | 9 | - | 13.12 | TTAATTAA |
| Eulor5A | TEAD2 | 295 | 301 | + | 13.03 | ACATTCC |
| Eulor5A | pnt | 236 | 244 | - | 13.00 | TCCGGAAAT |
| Eulor5A | Ptx1 | 113 | 119 | + | 12.99 | TTAATCC |
| Eulor5A | Ptx1 | 43 | 49 | - | 12.99 | TTAATCC |
| Eulor5A | ELF1 | 121 | 129 | + | 12.94 | CAGGAAATG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
