Eulor5A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000130 |
|---|---|
| TE superfamily | Crypton-A |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 316 |
| Kimura value | 28.98 |
| Tau index | 0.0000 |
| Description | Eulor5A (Euteleostomi-conserved low frequency repeat 5A) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. The hairpin of Eulor5A/B and Eulor6A-E are at the same position and up to 70% similar. The termini are also similar. |
| Sequence |
CTTAATTAAGCAATAACGATCGAGGCGCAGGGCATTTCCTGGGGATTAATGACCGGCTGGGAGGAGTTGATGGCCCGAGGCANAGCCGAGGGCCATTAACCCCAGCCGGTCATTAATCCCCAGGAAATGCCCTGCGCCGAGGTCGTTATTGCTATTATAAGCTGAAAACGNAGAAACGAACAGGCGTATGGATTTTTTTTATGGGTGATGCAGTTTCAATTGGTATGTACAGGGCATTTCCGGAGAATTAATGCCCTGTACATTAGCCAATCAGATTGCTCGAATCATCTCTCAACATTCCATTCGGCTTATAATT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor5A | HAP5 | 266 | 279 | - | 16.67 | GCAATCTGATTGGC |
| Eulor5A | HAP3 | 265 | 273 | - | 15.11 | TGATTGGCT |
| Eulor5A | THAP1 | 128 | 135 | - | 14.80 | GCAGGGCA |
| Eulor5A | THAP1 | 27 | 34 | + | 14.80 | GCAGGGCA |
| Eulor5A | TFAP2B | 73 | 81 | + | 14.67 | GCCCGAGGC |
| Eulor5A | MZF1 | 115 | 122 | + | 14.60 | AATCCCCA |
| Eulor5A | MZF1 | 40 | 47 | - | 14.60 | AATCCCCA |
| Eulor5A | NR4A2::RXRA | 90 | 102 | + | 14.57 | GGGCCATTAACCC |
| Eulor5A | NFYA | 267 | 274 | + | 14.54 | CCAATCAG |
| Eulor5A | TEAD4 | 295 | 302 | + | 14.45 | ACATTCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
