Eulor5A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000130 |
|---|---|
| TE superfamily | Crypton-A |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 316 |
| Kimura value | 28.98 |
| Tau index | 0.0000 |
| Description | Eulor5A (Euteleostomi-conserved low frequency repeat 5A) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. The hairpin of Eulor5A/B and Eulor6A-E are at the same position and up to 70% similar. The termini are also similar. |
| Sequence |
CTTAATTAAGCAATAACGATCGAGGCGCAGGGCATTTCCTGGGGATTAATGACCGGCTGGGAGGAGTTGATGGCCCGAGGCANAGCCGAGGGCCATTAACCCCAGCCGGTCATTAATCCCCAGGAAATGCCCTGCGCCGAGGTCGTTATTGCTATTATAAGCTGAAAACGNAGAAACGAACAGGCGTATGGATTTTTTTTATGGGTGATGCAGTTTCAATTGGTATGTACAGGGCATTTCCGGAGAATTAATGCCCTGTACATTAGCCAATCAGATTGCTCGAATCATCTCTCAACATTCCATTCGGCTTATAATT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor5A | LMX1B | 2 | 9 | - | 13.84 | TTAATTAA |
| Eulor5A | ZNF263 | 59 | 65 | + | 13.83 | GGGAGGA |
| Eulor5A | Ets21C | 236 | 243 | - | 13.81 | CCGGAAAT |
| Eulor5A | ztf-6 | 160 | 168 | + | 13.72 | AGCTGAAAA |
| Eulor5A | TFAP2C | 73 | 81 | + | 13.71 | GCCCGAGGC |
| Eulor5A | PITX2 | 113 | 120 | + | 13.60 | TTAATCCC |
| Eulor5A | PITX2 | 42 | 49 | - | 13.60 | TTAATCCC |
| Eulor5A | ZNF384 | 193 | 200 | - | 13.57 | AAAAAAAA |
| Eulor5A | TFAP2B | 73 | 81 | - | 13.40 | GCCTCGGGC |
| Eulor5A | TFAP2A | 73 | 81 | - | 13.24 | GCCTCGGGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
