Eulor5A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000130 |
|---|---|
| TE superfamily | Crypton-A |
| TE class | DNA |
| Species | Tetrapoda |
| Length | 316 |
| Kimura value | 28.98 |
| Tau index | 0.0000 |
| Description | Eulor5A (Euteleostomi-conserved low frequency repeat 5A) |
| Comment | Putative DNA transposon (assignment unclear). Position (roughly) 1-160 is an imperfect hairpin. The hairpin of Eulor5A/B and Eulor6A-E are at the same position and up to 70% similar. The termini are also similar. |
| Sequence |
CTTAATTAAGCAATAACGATCGAGGCGCAGGGCATTTCCTGGGGATTAATGACCGGCTGGGAGGAGTTGATGGCCCGAGGCANAGCCGAGGGCCATTAACCCCAGCCGGTCATTAATCCCCAGGAAATGCCCTGCGCCGAGGTCGTTATTGCTATTATAAGCTGAAAACGNAGAAACGAACAGGCGTATGGATTTTTTTTATGGGTGATGCAGTTTCAATTGGTATGTACAGGGCATTTCCGGAGAATTAATGCCCTGTACATTAGCCAATCAGATTGCTCGAATCATCTCTCAACATTCCATTCGGCTTATAATT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor5A | Stat6 | 238 | 247 | + | 14.45 | TTCCGGAGAA |
| Eulor5A | Ets65A | 236 | 243 | - | 14.44 | CCGGAAAT |
| Eulor5A | nfya-1 | 265 | 274 | + | 14.30 | AGCCAATCAG |
| Eulor5A | TfAP-2 | 73 | 81 | + | 14.21 | GCCCGAGGC |
| Eulor5A | TfAP-2 | 73 | 81 | - | 14.16 | GCCTCGGGC |
| Eulor5A | cad | 196 | 206 | - | 14.05 | ACCCATAAAAA |
| Eulor5A | TFAP2E | 73 | 81 | + | 14.04 | GCCCGAGGC |
| Eulor5A | TFAP2E | 73 | 81 | - | 14.02 | GCCTCGGGC |
| Eulor5A | ELK4 | 235 | 243 | + | 13.84 | CATTTCCGG |
| Eulor5A | LMX1B | 2 | 9 | + | 13.84 | TTAATTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
