Eulor3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000128 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 304 |
| Kimura value | 27.98 |
| Tau index | 0.0000 |
| Description | Eulor3 (Euteleostomi-conserved low frequency repeat 3) |
| Comment | Putative DNA transposon (assignment unclear). Like Eulor1 and Eulor2A/B it has a hairpin-like structure followed by a tail. Eulor3 consensus was derived from human copies. Termini are weak and probably incomplete. Near perfect (>90% id) hairpin overall, which contains a number of 41 bp and 82 bp imperfect internal palindromes. Appears in eutherians, platypus, chicken (40-50 copies each), lizard, not in Xenopus. |
| Sequence |
GAACATCTTGGCACTACTATACCTTCTGTCCTGTAATTAAACCGAATCTGCTCCTGGACCCGTTCTTCCCTGGACGGCGCCATCTTTTGAGTAATACATCATCAGAGCGCCTCGCTCTGATGATGTATTACNCTAATACATCATCAGAGCGCCGTCGCTCTGATGATGTATTAGTGTAATACATCATCAGAGCGAGGCNCACTGATGATGTATTACTCAAAAGATGGCGCCGTCCGAGGAAGAAAGGGTCCAGGAGCAGATTCANTNTAATTACAGNATAAAAGNCAACCTAGNGCCAGGAGGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor3 | inv | 34 | 41 | - | 12.10 | TTTAATTA |
| Eulor3 | RAP2-12 | 149 | 159 | - | 12.08 | AGCGACGGCGC |
| Eulor3 | PK17878.1 | 150 | 157 | + | 12.07 | CGCCGTCG |
| Eulor3 | ERF109 | 149 | 156 | + | 11.95 | GCGCCGTC |
| Eulor3 | ERF109 | 227 | 234 | + | 11.95 | GCGCCGTC |
| Eulor3 | ERF109 | 73 | 80 | - | 11.95 | GCGCCGTC |
| Eulor3 | ERF4 | 149 | 157 | + | 11.89 | GCGCCGTCG |
| Eulor3 | ERF105 | 149 | 158 | - | 11.83 | GCGACGGCGC |
| Eulor3 | HOXB7 | 268 | 274 | - | 11.79 | GTAATTA |
| Eulor3 | HOXB7 | 33 | 39 | + | 11.79 | GTAATTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
