Eulor3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000128 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 304 |
| Kimura value | 27.98 |
| Tau index | 0.0000 |
| Description | Eulor3 (Euteleostomi-conserved low frequency repeat 3) |
| Comment | Putative DNA transposon (assignment unclear). Like Eulor1 and Eulor2A/B it has a hairpin-like structure followed by a tail. Eulor3 consensus was derived from human copies. Termini are weak and probably incomplete. Near perfect (>90% id) hairpin overall, which contains a number of 41 bp and 82 bp imperfect internal palindromes. Appears in eutherians, platypus, chicken (40-50 copies each), lizard, not in Xenopus. |
| Sequence |
GAACATCTTGGCACTACTATACCTTCTGTCCTGTAATTAAACCGAATCTGCTCCTGGACCCGTTCTTCCCTGGACGGCGCCATCTTTTGAGTAATACATCATCAGAGCGCCTCGCTCTGATGATGTATTACNCTAATACATCATCAGAGCGCCGTCGCTCTGATGATGTATTAGTGTAATACATCATCAGAGCGAGGCNCACTGATGATGTATTACTCAAAAGATGGCGCCGTCCGAGGAAGAAAGGGTCCAGGAGCAGATTCANTNTAATTACAGNATAAAAGNCAACCTAGNGCCAGGAGGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor3 | phol | 220 | 229 | - | 16.57 | CGCCATCTTT |
| Eulor3 | phol | 78 | 87 | + | 16.57 | CGCCATCTTT |
| Eulor3 | CTCF | 221 | 230 | + | 14.97 | AAGATGGCGC |
| Eulor3 | CTCF | 77 | 86 | - | 14.97 | AAGATGGCGC |
| Eulor3 | NRG1 | 244 | 251 | + | 14.66 | AAGGGTCC |
| Eulor3 | ERF017 | 71 | 79 | + | 14.64 | TGGACGGCG |
| Eulor3 | ZNF417 | 225 | 231 | - | 14.55 | GGCGCCA |
| Eulor3 | ZNF417 | 76 | 82 | + | 14.55 | GGCGCCA |
| Eulor3 | Os05g0497200 | 225 | 232 | - | 14.24 | CGGCGCCA |
| Eulor3 | Os05g0497200 | 75 | 82 | + | 14.24 | CGGCGCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
