Eulor3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000128 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 304 |
| Kimura value | 27.98 |
| Tau index | 0.0000 |
| Description | Eulor3 (Euteleostomi-conserved low frequency repeat 3) |
| Comment | Putative DNA transposon (assignment unclear). Like Eulor1 and Eulor2A/B it has a hairpin-like structure followed by a tail. Eulor3 consensus was derived from human copies. Termini are weak and probably incomplete. Near perfect (>90% id) hairpin overall, which contains a number of 41 bp and 82 bp imperfect internal palindromes. Appears in eutherians, platypus, chicken (40-50 copies each), lizard, not in Xenopus. |
| Sequence |
GAACATCTTGGCACTACTATACCTTCTGTCCTGTAATTAAACCGAATCTGCTCCTGGACCCGTTCTTCCCTGGACGGCGCCATCTTTTGAGTAATACATCATCAGAGCGCCTCGCTCTGATGATGTATTACNCTAATACATCATCAGAGCGCCGTCGCTCTGATGATGTATTAGTGTAATACATCATCAGAGCGAGGCNCACTGATGATGTATTACTCAAAAGATGGCGCCGTCCGAGGAAGAAAGGGTCCAGGAGCAGATTCANTNTAATTACAGNATAAAAGNCAACCTAGNGCCAGGAGGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor3 | ERF077 | 149 | 158 | + | 12.59 | GCGCCGTCGC |
| Eulor3 | LMX1B | 33 | 40 | - | 12.56 | TTAATTAC |
| Eulor3 | ERF018 | 71 | 78 | - | 12.49 | GCCGTCCA |
| Eulor3 | MYB101 | 39 | 47 | + | 12.48 | AAACCGAAT |
| Eulor3 | pan | 217 | 230 | - | 12.45 | GCGCCATCTTTTGA |
| Eulor3 | pan | 77 | 90 | + | 12.45 | GCGCCATCTTTTGA |
| Eulor3 | Zm00001d031796 | 225 | 234 | - | 12.43 | GACGGCGCCA |
| Eulor3 | Zm00001d031796 | 73 | 82 | + | 12.43 | GACGGCGCCA |
| Eulor3 | Vsx2 | 33 | 41 | - | 12.31 | TTTAATTAC |
| Eulor3 | HOXD9 | 33 | 41 | + | 12.28 | GTAATTAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
