Eulor2C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000127 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 168 |
| Kimura value | 26.12 |
| Tau index | 0.0000 |
| Description | Eulor2C (Euteleostomi-conserved low frequency repeat 2C) |
| Comment | Putative DNA transposon (assignment unclear). Distantly related to Eulor2A and 2B. It has a conserved secondary structure. Matches part of the hairpin of Eulor2A & B, but < 75% similar. |
| Sequence |
TANTTAAGGGATAATGTTCACGGCGGAGGAGTATACGAAGCAATAAACGGCTTTTGCGGGTGATTAAACGCCGAAGTGAAGCTGAGGCGTTTGATNAACCGCAAAAGCCGTTTATTGCGAGTATACTCCAATGCCACGAACATTATTCCTATTACACGACAAGANAGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2C | pal-1 | 111 | 118 | - | 12.42 | GCAATAAA |
| Eulor2C | pal-1 | 40 | 47 | + | 12.42 | GCAATAAA |
| Eulor2C | AT3G10580 | 5 | 18 | + | 12.34 | TAAGGGATAATGTT |
| Eulor2C | IDD11 | 153 | 164 | + | 12.33 | TACACGACAAGA |
| Eulor2C | ZHD5 | 60 | 67 | + | 12.25 | GTGATTAA |
| Eulor2C | CHA4 | 22 | 29 | + | 12.17 | GGCGGAGG |
| Eulor2C | LBD13 | 20 | 27 | - | 12.14 | TCCGCCGT |
| Eulor2C | HOXD9 | 110 | 118 | - | 12.12 | GCAATAAAC |
| Eulor2C | HOXD9 | 40 | 48 | + | 12.12 | GCAATAAAC |
| Eulor2C | GLYMA-06G314400 | 132 | 139 | - | 11.93 | TCGTGGCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
