Eulor2C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000127 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 168 |
| Kimura value | 26.12 |
| Tau index | 0.0000 |
| Description | Eulor2C (Euteleostomi-conserved low frequency repeat 2C) |
| Comment | Putative DNA transposon (assignment unclear). Distantly related to Eulor2A and 2B. It has a conserved secondary structure. Matches part of the hairpin of Eulor2A & B, but < 75% similar. |
| Sequence |
TANTTAAGGGATAATGTTCACGGCGGAGGAGTATACGAAGCAATAAACGGCTTTTGCGGGTGATTAAACGCCGAAGTGAAGCTGAGGCGTTTGATNAACCGCAAAAGCCGTTTATTGCGAGTATACTCCAATGCCACGAACATTATTCCTATTACACGACAAGANAGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2C | ERF086 | 20 | 29 | - | 16.53 | CCTCCGCCGT |
| Eulor2C | ZNF343 | 69 | 84 | - | 16.00 | CAGCTTCACTTCGGCG |
| Eulor2C | RAP2-6 | 18 | 32 | + | 15.12 | TCACGGCGGAGGAGT |
| Eulor2C | ARF4 | 156 | 163 | + | 14.58 | ACGACAAG |
| Eulor2C | ERF077 | 20 | 29 | - | 14.47 | CCTCCGCCGT |
| Eulor2C | CDX2 | 111 | 118 | - | 14.13 | GCAATAAA |
| Eulor2C | CDX2 | 40 | 47 | + | 14.13 | GCAATAAA |
| Eulor2C | ERF2 | 20 | 32 | - | 13.92 | ACTCCTCCGCCGT |
| Eulor2C | ERF8 | 18 | 28 | + | 13.77 | TCACGGCGGAG |
| Eulor2C | ERF122 | 19 | 28 | + | 13.64 | CACGGCGGAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
