Eulor2C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000127 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 168 |
| Kimura value | 26.12 |
| Tau index | 0.0000 |
| Description | Eulor2C (Euteleostomi-conserved low frequency repeat 2C) |
| Comment | Putative DNA transposon (assignment unclear). Distantly related to Eulor2A and 2B. It has a conserved secondary structure. Matches part of the hairpin of Eulor2A & B, but < 75% similar. |
| Sequence |
TANTTAAGGGATAATGTTCACGGCGGAGGAGTATACGAAGCAATAAACGGCTTTTGCGGGTGATTAAACGCCGAAGTGAAGCTGAGGCGTTTGATNAACCGCAAAAGCCGTTTATTGCGAGTATACTCCAATGCCACGAACATTATTCCTATTACACGACAAGANAGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2C | Cdx | 40 | 47 | - | 12.76 | TTTATTGC |
| Eulor2C | Hoxd13 | 111 | 117 | - | 12.73 | CAATAAA |
| Eulor2C | Hoxd13 | 41 | 47 | + | 12.73 | CAATAAA |
| Eulor2C | ERF105 | 20 | 29 | + | 12.67 | ACGGCGGAGG |
| Eulor2C | IME1 | 21 | 28 | + | 12.66 | CGGCGGAG |
| Eulor2C | NUC | 153 | 164 | - | 12.64 | TCTTGTCGTGTA |
| Eulor2C | run | 97 | 104 | + | 12.59 | AACCGCAA |
| Eulor2C | HMRA2 | 151 | 158 | - | 12.52 | CGTGTAAT |
| Eulor2C | LEP | 19 | 28 | - | 12.52 | CTCCGCCGTG |
| Eulor2C | IDD7 | 151 | 164 | + | 12.42 | ATTACACGACAAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
