Eulor2B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000126 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 273 |
| Kimura value | 27.92 |
| Tau index | 0.0000 |
| Description | Eulor2B (Euteleostomi-conserved low frequency repeat 2B) |
| Comment | Putative DNA transposon (assignment unclear). Eulor2B has a 34bp internal deletion relative to Eulor2A. Hairpin (roughly) pos 1-157. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACAGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGNAAGCCGAGACGTTTATTTTCAAAGCAGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTATTATACCAAATGATTGATGTAGATTTAATCATTTTGTCTGATGGATGTTGGTGCAGTAGAGTGACAGNTGCTCGCTGTACCATCGTTGANTTGCTGCGTTCGGATTGGCTTAGAAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2B | ZAT6 | 180 | 187 | - | 11.52 | AATGATTA |
| Eulor2B | MEIS1 | 193 | 201 | - | 11.40 | CATCCATCA |
| Eulor2B | dsf | 141 | 148 | - | 11.34 | TAAAGTCA |
| Eulor2B | SGR5 | 186 | 198 | - | 11.23 | CCATCAGACAAAA |
| Eulor2B | ATHB-4 | 180 | 188 | + | 11.16 | TAATCATTT |
| Eulor2B | ATHB-5 | 180 | 187 | + | 11.15 | TAATCATT |
| Eulor2B | AT2G38090 | 38 | 50 | + | 10.80 | ACAGGATAATGGT |
| Eulor2B | DOF3.2 | 141 | 156 | + | 10.80 | TGACTTTATTTCTATT |
| Eulor2B | MYB96 | 196 | 206 | - | 10.80 | ACCAACATCCA |
| Eulor2B | Prdm5 | 48 | 58 | + | 10.80 | GGTCTCCCGCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
