Eulor2B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000126 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 273 |
| Kimura value | 27.92 |
| Tau index | 0.0000 |
| Description | Eulor2B (Euteleostomi-conserved low frequency repeat 2B) |
| Comment | Putative DNA transposon (assignment unclear). Eulor2B has a 34bp internal deletion relative to Eulor2A. Hairpin (roughly) pos 1-157. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACAGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGNAAGCCGAGACGTTTATTTTCAAAGCAGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTATTATACCAAATGATTGATGTAGATTTAATCATTTTGTCTGATGGATGTTGGTGCAGTAGAGTGACAGNTGCTCGCTGTACCATCGTTGANTTGCTGCGTTCGGATTGGCTTAGAAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2B | Dux | 175 | 185 | + | 16.90 | AGATTTAATCA |
| Eulor2B | ZHD9 | 1 | 15 | - | 15.66 | ATTATCTCTTAATTA |
| Eulor2B | MEIS1 | 165 | 173 | - | 15.29 | CATCAATCA |
| Eulor2B | PKNOX1 | 212 | 221 | + | 15.06 | AGAGTGACAG |
| Eulor2B | ttk | 39 | 47 | + | 14.93 | CAGGATAAT |
| Eulor2B | PBX1 | 164 | 172 | - | 14.71 | ATCAATCAT |
| Eulor2B | ZAT6 | 163 | 170 | + | 14.13 | AATGATTG |
| Eulor2B | ATHB-5 | 163 | 170 | - | 14.12 | CAATCATT |
| Eulor2B | HAT1 | 163 | 170 | - | 13.41 | CAATCATT |
| Eulor2B | HAT2 | 180 | 187 | + | 13.38 | TAATCATT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
