Eulor2B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000126 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 273 |
| Kimura value | 27.92 |
| Tau index | 0.0000 |
| Description | Eulor2B (Euteleostomi-conserved low frequency repeat 2B) |
| Comment | Putative DNA transposon (assignment unclear). Eulor2B has a 34bp internal deletion relative to Eulor2A. Hairpin (roughly) pos 1-157. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACAGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGNAAGCCGAGACGTTTATTTTCAAAGCAGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTATTATACCAAATGATTGATGTAGATTTAATCATTTTGTCTGATGGATGTTGGTGCAGTAGAGTGACAGNTGCTCGCTGTACCATCGTTGANTTGCTGCGTTCGGATTGGCTTAGAAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2B | ARF10 | 48 | 58 | - | 12.51 | AGCGGGAGACC |
| Eulor2B | SoxB1 | 137 | 147 | - | 12.51 | AAAGTCATTGT |
| Eulor2B | ARF25 | 102 | 113 | + | 12.43 | AGCAGGAGACAT |
| Eulor2B | MEIS2 | 165 | 173 | + | 12.34 | TGATTGATG |
| Eulor2B | ATHB-X | 180 | 188 | + | 12.33 | TAATCATTT |
| Eulor2B | PBX2 | 165 | 173 | - | 12.32 | CATCAATCA |
| Eulor2B | AT3G46070 | 212 | 218 | - | 12.26 | TCACTCT |
| Eulor2B | ATHB-13 | 163 | 170 | - | 11.70 | CAATCATT |
| Eulor2B | ARF18 | 187 | 194 | - | 11.61 | CAGACAAA |
| Eulor2B | ZHD6 | 179 | 190 | - | 11.55 | CAAAATGATTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
