Eulor2B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000126 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 273 |
| Kimura value | 27.92 |
| Tau index | 0.0000 |
| Description | Eulor2B (Euteleostomi-conserved low frequency repeat 2B) |
| Comment | Putative DNA transposon (assignment unclear). Eulor2B has a 34bp internal deletion relative to Eulor2A. Hairpin (roughly) pos 1-157. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACAGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGNAAGCCGAGACGTTTATTTTCAAAGCAGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTATTATACCAAATGATTGATGTAGATTTAATCATTTTGTCTGATGGATGTTGGTGCAGTAGAGTGACAGNTGCTCGCTGTACCATCGTTGANTTGCTGCGTTCGGATTGGCTTAGAAAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2B | Dux | 175 | 185 | - | 13.37 | TGATTAAATCT |
| Eulor2B | ATHB-X | 162 | 170 | - | 13.36 | CAATCATTT |
| Eulor2B | ARF10 | 102 | 112 | + | 13.29 | AGCAGGAGACA |
| Eulor2B | HAT2 | 163 | 170 | - | 13.17 | CAATCATT |
| Eulor2B | FOXD3 | 89 | 102 | - | 12.89 | TTTGAAAATAAACG |
| Eulor2B | ATHB-16 | 180 | 187 | + | 12.81 | TAATCATT |
| Eulor2B | ATHB-12 | 163 | 170 | + | 12.80 | AATGATTG |
| Eulor2B | MYB83 | 200 | 207 | - | 12.74 | CACCAACA |
| Eulor2B | ATHB-7 | 161 | 171 | + | 12.64 | CAAATGATTGA |
| Eulor2B | HAT1 | 180 | 187 | + | 12.62 | TAATCATT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
