Eulor2A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000125 |
|---|---|
| TE superfamily | Transposase |
| TE order | DNA |
| Species | Amniota |
| Length | 306 |
| Kimura value | 27.05 |
| Tau index | 0.0000 |
| Description | Eulor2A (Euteleostomi-conserved low frequency repeat 2A) |
| Comment | Putative DNA transposon (assignment unclear). Present in chicken (~200 copies) and mammals (~150 copies). Split into two subfamilies (Eulor2A and 2B), differing mainly by a 31bp indel. Like Eulor1, Eulor2 subfamilies also have a characteristic hairpin-tail structure. Hairpin (roughly) pos 8-188. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACGGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGAAGCCGAGGCATTTATCGAAAATAAACGTCGAGGCGAAGCCGAGACGTTTATTTTCAAAGCGGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTGTTATACCAAATGATTGATGTAGATTTAATCACTTTGTCTGATGGATGTTGGTGCAGCGGAATGACAGTCGCTCGCCGTACCGTTNTTAANCNGCTGCGTTCTGATCGGCTTAGGGGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2A | ARF18 | 222 | 229 | - | 11.61 | CAGACAAA |
| Eulor2A | ZIM3 | 182 | 192 | - | 11.55 | TAACAGAAATA |
| Eulor2A | NAC071 | 103 | 117 | - | 11.48 | CTTCGCCTCGACGTT |
| Eulor2A | MEIS1 | 228 | 236 | - | 11.40 | CATCCATCA |
| Eulor2A | dsf | 176 | 183 | - | 11.34 | TAAAGTCA |
| Eulor2A | Stat2 | 184 | 193 | - | 11.18 | ATAACAGAAA |
| Eulor2A | PKNOX1 | 247 | 256 | + | 10.91 | GGAATGACAG |
| Eulor2A | Gsx | 206 | 225 | + | 10.84 | ATGTAGATTTAATCACTTTG |
| Eulor2A | MYB96 | 231 | 241 | - | 10.80 | ACCAACATCCA |
| Eulor2A | Prdm5 | 48 | 58 | + | 10.80 | GGTCTCCCGCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
