Eulor2A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000125 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 306 |
| Kimura value | 27.05 |
| Tau index | 0.0000 |
| Description | Eulor2A (Euteleostomi-conserved low frequency repeat 2A) |
| Comment | Putative DNA transposon (assignment unclear). Present in chicken (~200 copies) and mammals (~150 copies). Split into two subfamilies (Eulor2A and 2B), differing mainly by a 31bp indel. Like Eulor1, Eulor2 subfamilies also have a characteristic hairpin-tail structure. Hairpin (roughly) pos 8-188. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACGGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGAAGCCGAGGCATTTATCGAAAATAAACGTCGAGGCGAAGCCGAGACGTTTATTTTCAAAGCGGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTGTTATACCAAATGATTGATGTAGATTTAATCACTTTGTCTGATGGATGTTGGTGCAGCGGAATGACAGTCGCTCGCCGTACCGTTNTTAANCNGCTGCGTTCTGATCGGCTTAGGGGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2A | ARF10 | 137 | 147 | + | 17.28 | AGCGGGAGACA |
| Eulor2A | Dux | 210 | 220 | + | 16.90 | AGATTTAATCA |
| Eulor2A | ZNF343 | 69 | 84 | - | 16.70 | CGGCTTCGCCTCGGCA |
| Eulor2A | ARF25 | 137 | 148 | + | 16.43 | AGCGGGAGACAT |
| Eulor2A | ZHD9 | 1 | 15 | - | 15.66 | ATTATCTCTTAATTA |
| Eulor2A | MEIS1 | 200 | 208 | - | 15.29 | CATCAATCA |
| Eulor2A | PBX1 | 199 | 207 | - | 14.71 | ATCAATCAT |
| Eulor2A | ZAT6 | 198 | 205 | + | 14.13 | AATGATTG |
| Eulor2A | ATHB-5 | 198 | 205 | - | 14.12 | CAATCATT |
| Eulor2A | HAT1 | 198 | 205 | - | 13.41 | CAATCATT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
