Eulor2A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000125 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 306 |
| Kimura value | 27.05 |
| Tau index | 0.0000 |
| Description | Eulor2A (Euteleostomi-conserved low frequency repeat 2A) |
| Comment | Putative DNA transposon (assignment unclear). Present in chicken (~200 copies) and mammals (~150 copies). Split into two subfamilies (Eulor2A and 2B), differing mainly by a 31bp indel. Like Eulor1, Eulor2 subfamilies also have a characteristic hairpin-tail structure. Hairpin (roughly) pos 8-188. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACGGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGAAGCCGAGGCATTTATCGAAAATAAACGTCGAGGCGAAGCCGAGACGTTTATTTTCAAAGCGGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTGTTATACCAAATGATTGATGTAGATTTAATCACTTTGTCTGATGGATGTTGGTGCAGCGGAATGACAGTCGCTCGCCGTACCGTTNTTAANCNGCTGCGTTCTGATCGGCTTAGGGGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2A | SoxB1 | 172 | 182 | - | 12.51 | AAAGTCATTGT |
| Eulor2A | ARF13 | 137 | 150 | + | 12.51 | AGCGGGAGACATTG |
| Eulor2A | FOXD3 | 93 | 106 | + | 12.36 | ATCGAAAATAAACG |
| Eulor2A | MEIS2 | 200 | 208 | + | 12.34 | TGATTGATG |
| Eulor2A | PBX2 | 200 | 208 | - | 12.32 | CATCAATCA |
| Eulor2A | ZHD5 | 214 | 221 | - | 12.25 | GTGATTAA |
| Eulor2A | ZHD6 | 214 | 225 | - | 11.99 | CAAAGTGATTAA |
| Eulor2A | ATHB-13 | 198 | 205 | - | 11.70 | CAATCATT |
| Eulor2A | Dref | 92 | 99 | + | 11.64 | TATCGAAA |
| Eulor2A | TFAP2A | 296 | 306 | - | 11.64 | TCCCCTAAGCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
